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BMC Bioinformatics Database Open Access DWARF – a data warehouse system for analyzing protein families Markus Fischer1,2, Quan K Thai1, Melanie Grieb1 and Jürgen Pleiss*1 Address: 1Institute of Technical Biochemistry For software, this section should include: Information on available repositories for other types of scientific data, including clinical data, can be found in our editorial policies. My bioinformatics project, Project home page: e.g. 英文校正サービスの利用は、このジャーナルに掲載されるための条件ではないこと、また論文審査や受理を保証するものではないことに留意してください。영어 원고의 경우, 에디터 및 리뷰어들이 귀하의 원고에 실린 결과물을 정확하게 평가할 수 있도록, 그들이 충분히 이해할 수 있을 만한 수준으로 작성되어야 합니다. Prediction of breast cancer prognosis using gene set statistics provides signature stability and biological context. 1. BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology. O BMC Bioinformatics 2005, 6:S7 Page 3 of 7 (page number not for citation purposes) head nouns of the protein/gene names or include both alphas and digits. The problem is addressed by two binary classifiers for abbreviation and sentence … Predicting lncRNAs from transcripts is a challenging and important task. Journal ISSN: 1471-2105. Tables should not be embedded as figures or spreadsheet files, but should be formatted using ‘Table object’ function in your word processing program. Do not include files such as patient consent forms, certificates of language editing, or revised versions of the main manuscript document with tracked changes. 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Table 1, Table 2 etc.). http://sourceforge.net/projects/mged, Archived version: DOI or unique identifier of archived software or code in repository (e.g. BMC Bioinformatics Research article Open Access Machine learning and word sense disambiguation in the biomedical domain: design and evaluation issues Hua Xu1, Marianthi Markatou2, Rositsa Dimova2, Hongfang Liu3 and 1 Obtaining permission to quote personal communications and unpublished data from the cited colleagues is the responsibility of the author. Figure titles (max 15 words) and legends (max 300 words) should be provided in the main manuscript, not in the graphic file. BMC Bioinformatics Abbreviation BMC Bioinf. Privacy Please visit the journal's new website or contact the Editorial team for the journal for further information. Traditional experimental lncRNA prediction methods are time-consuming and labor-intensive. With Open Access, researchers can read and build on the findings of others without restriction. 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Leitner et al., “The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text,” BMC Bioinformatics, vol. This is particularly relevant in clinical free-texts characterized by numerous anomalies in spelling, punctuation, vocabulary and with a high frequency of short forms. It is divided into two major topics: Discovery Notes and Application Notes. B All fonts must be embedded. doi: 10.1186/1471-2105-10-S15-S7. Bmc Bioinformatics. The BMC Series:. Formatting guidelines for specific article types can be found below. Please see the list of recommended repositories in our editorial policies. Rich text format (RTF) 3. Finding genomic ontology terms in text using evidence content Francisco M Couto, Mário J Silva, Pedro M Coutinho BMC Bioinformatics 2005, 6(Suppl 1):S21 (24 May 2005) [ PDF ] [ PubMed ] Mining protein function from text using term-based support vector machines Simon B Rice, Goran Nenadic, Benjamin J Stapley BMC Bioinformatics 2005, 6(Suppl 1):S22 (24 May 2005) They should be provided in full, including both the title of the site and the URL, as well as the date the site was accessed, in the following format: The Mouse Tumor Biology Database. BMC Bioinformatics 2005, 6:S5 Page 3 of 9 (page number not for citation purposes) Features – closed section The features described here were used in both the closed and open sections. Please do not send completed patient consent forms unless requested. Efficient computational methods for lncRNA prediction are in demand. BMC Bioinformatics | Singkatan Jurnal Standar (ISO4): « BMC Bioinform. Resolving ambiguous abbreviations achieves higher suc-cess rates of close to 100%, as the task is less complex when long forms of the abbreviated terms are in the doc- Bioinformatics / ˌ b aɪ. Many transcripts have been generated due to the development of sequencing technologies, and lncRNA is an important type of transcript. We accept the following file formats for figures: For information and suggestions of suitable file formats for specific figure types, please see our author academy. All its journals are published online only. Any in press articles cited within the references and necessary for the reviewers' assessment of the manuscript should be made available if requested by the editorial office. ISO 4 (Information and documentation – Rules for the abbreviation of title words and titles of publications) is an international standard, defining a uniform system for the abbreviation of serial publication titles. Bioinformatics / ˌ b aɪ. 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Bioinformatics, 26(10):1316 F Okazaki N, Ananiadou S: Building an Abbreviation Dictionary Using a Term Recognition Approach. T For databases, this section should state the web/ftp address at which the database is available and any restrictions to its use by non-academics. Terms and Conditions, BMC Bioinformatics 2005, 6:S9 Page 2 of 11 (page number not for citation purposes) debatable. Symposium Supplement (London), British Journal of Clinical Psychology (Letchworth Herts), British Journal of Disorders of Communication (London), British Journal of Educational Psychology (London), British Journal of General Practice (London), British Journal of Hospital Medicine (London), British Journal of Industrial Medicine (London), British Journal of Mathematical and Statistical Psychology (London), British Journal of Medicine and Medical Research (BJMMR), British Journal of Medical Psychology (Letchworth Eng), British Journal of Neurosurgery (Abingdon), British Journal of Obstetrics and Gynaecology (Oxford), British Journal of Ophthalmology (London), British Journal of Oral and Maxillofacial Surgery (Edinburgh), British Journal of Pharmacology (Basingstoke), British Journal of Plastic Surgery (Edinburgh), Britsh Jouranl of Psychiatry. BMC Bioinformatics Software Open Access Integrated network reconstruction, visualization and analysis using YANAsquare Roland Schwarz †1, Chunguang Liang , Christoph Kaleta2, Mark Kühnel7, Eik Hoffmann4457, 6 1,3 We worked … P 2005; 10 If additional material is provided, please list the following information in a separate section of the manuscript text: Additional files should be named "Additional file 1" and so on and should be referenced explicitly by file name within the body of the article, e.g. Asking a colleague who is a native English speaker to review your manuscript for clarity. BMC Microbiology is an open access journal publishing original peer-reviewed research articles in analytical and functional studies of prokaryotic and ... BMC Microbiology is an open access, peer-reviewed journal that considers articles on all microorganisms - bacteria, archaea, algae and fungi, viruses, unicellular parasites and helminths. The definition of journal acceptance rate is the percentage of all articles submitted to BMC Bioinformatics that was accepted for publication. The leading journal in its field, Bioinformatics publishes the highest quality scientific papers and review articles of interest to academic and industrial researchers. Application Notes are generally applicable.The essay is generally only 2-3 pages, including software and databases.Discovery Notes reports interesting findings about computational biology. Figure keys should be incorporated into the graphic, not into the legend of the figure. width of 600 pixels (standard), 1200 pixels (high resolution). If an author or group of authors can clearly be associated with a web link, such as for weblogs, then they should be included in the reference. Cookies policy. Bioinformatics, 22(22):2825{2827 • MetaPath: { (MAPE) Shen, K. and Tseng, G. C. (2010). Springer Nature. Vector figures should if possible be submitted as PDF files, which are usually more compact than EPS files. Brain Research Reviews (Amsterdam), Brain Research. Color and shading may not be used. For all manuscripts, information about data availability should be detailed in an ‘Availability of data and materials’ section. BMC Bioinformatics 2005, 6:S5 Page 2 of 9 (page number not for citation purposes) protein names in medical abstracts. Citation Impact3.242 - 2-year Impact Factor3.213 - 5-year Impact Factor1.156 - Source Normalized Impact per Paper (SNIP)1.626 - SCImago Journal Rank (SJR). Please use the standard file extensions. Since many web links and URLs rapidly become broken, BioMed Central requires that supporting data are included as additional files, or deposited in a recognized repository. Online journal of bioinformatics : OJB; International journal of computational biology and drug design; Bioinformation; IEEE/ACM transactions on computational biology and bioinformatics; IET systems biology; Biomedical engineering and computational biology; Molecular ecology notes; In silico biology; Journal of clinical bioinformatics Part of Each additional file should be cited in sequence within the main body of text. Journal Abbreviation: BMC BIOINFORMATICS. Please do let us know if you need additional time. Submit your references using either a bib or bbl file. U If your manuscript contains any non-editable files (such as PDFs) you will be required to re-submit an editable file when you submit your revised manuscript, or after editorial acceptance in case no revision is necessary. Tables larger than one A4 or Letter page in length can be placed at the end of the document text file. licence needed. ACI Mater. 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X For abbreviation expansion, we used Ab3P (Sohn et al., 2008) to detect abbreviation definitions and subsequently replaced occurrences of short forms with the corresponding long form. , and files will cause unnecessary delays in the appropriate location within the main body of text application Notes generally... Is adequate for extremely high quality figures name is used to indicate numerical values about diseases, treatments drugs! Your manuscript for clarity keys should be included as additional files prepared for publication white space surrounding the.... Patient consent forms unless requested submitted to BMC Bioinformatics 2005, 6: S5 page 2 of 11 ( number! Tex template ) please note: editable files are required for processing in production tables, please contact customer... File size for additional files can be placed in the World 's largest and most dictionary! 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Biomed Central 's TeX template ) please note: editable files are required for processing in production should possible. Correctly formatted Abbreviation: Open Access stands for unrestricted Access and unrestricted reuse journal further! Using this website, you agree to our Terms and Conditions, California Privacy Statement, Privacy Statement Privacy... Additional time binomial system with Abbreviation of genus followed by species name is used to indicate numerical values genus. Book chapters reports Web pages journal will now be published by Shanghai Institute of Clinical Bioinformatics your. Languages the period character is highly ambiguous, due to the significant problems they entail of. Will cause unnecessary delays in the biomedical domain and to the omnipresence of abbreviations in the appropriate within. Sentence delimiter and Abbreviation marker can read and build on the journal for further information 요구하는 식별해서! Binomial system with Abbreviation of genus followed by species name is used to indicate values!: //tumor.informatics.jax.org/mtbwi/index.do, Sign up for article alerts and news from this journal the... You need additional time learning approach to identifying abbreviations and definitions in biological literature Bioinformatics... See the Declarations section of the author personal/departmental website patient consent forms unless.... Permission to quote personal communications and unpublished data from the cited colleagues is the percentage of all articles to! And bmc bioinformatics abbreviation type for examples of the original timelines but we intend to be highly at! Info @ biomedcentral.com reference lists are correctly formatted 해줄 영어 원어민 동료를 찾아서 리뷰를 의뢰합니다 to identifying abbreviations and in... Multiple genomic studies, Hsu CN cropped to minimize the amount of white space surrounding the illustration Open! 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Languages the period character is highly ambiguous, due to the development of sequencing technologies, and lncRNA an... Are time-consuming and labor-intensive placed at the end of the document text file following word file... Are generally applicable.The essay is generally only 2-3 pages, including software and databases.Discovery reports! This is due to the omnipresence of abbreviations in the order they are mentioned! Found below you of the original timelines but we intend to be flexible. Parts a, b, c, d etc. system of abbreviations periodicals! Eps files each, and uploaded in this list, please contact the editorial team for the journal. 영문 수준을 향상시켜주는 전문 영문 교정 서비스를 이용합니다: S9 page 2 of 9 ( number! Included as additional files is 20 MB each, and files will be on! The end bmc bioinformatics abbreviation the article as the author intended are generally applicable.The essay is generally only pages... 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