news.universal-300x109We have added the Universal Sequence Logos Tool to the ADB. This new sequence logo generator produces publication-quality logos that integrate high-order sequence dependencies and corresponded positions for PWMs, PSAMs, Di-PSAMs, and pHMMs. The ADB currently supports DNA, methyl-DNA, and RNA-binding models. It also includes a Correspondence Panel that depicts corresponded columns with tied parameters and shared binding information. The logos also provide biophysical measurements including relative affinities (Kas) and changes in binding free energy (ddG) for each sequence feature.



Dr. Todd Riley
Assistant Professor of Biology
University of Massachusetts Boston
100 Morrissey Blvd. | ISC Building Room 4730
Boston, Massachusetts 02125
Phone: (617) 287-3236